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Domestic Scheduled Flights
| Origin | Destination | Carier |
| MSO | DAL Dallas, TX US | |
| MSO | BIL Billings, MT | Big Sky Airlines, Inc. |
| MSO | DEN Denver, CO | Big Sky Airlines, Inc. |
| MSO | DFW Dallas/Fort Worth, TX | Big Sky Airlines, Inc. |
| MSO | FCA Kalispell, MT | Big Sky Airlines, Inc. |
| MSO | GEG Spokane, WA | Big Sky Airlines, Inc. |
| MSO | HLN Helena, MT | Big Sky Airlines, Inc. |
| MSO | EWR Newark, NJ US | Delta Air Lines |
| MSO | JFK New York City, NY US | Delta Air Lines |
| MSO | DFW Dallas / Ft Worth, TX US | Delta Air Lines |
| MSO | HOU Houston, TX US | Delta Air Lines |
| MSO | IAH Houston, TX US | Delta Air Lines |
| MSO | DCA Washington, DC, DC US | Northwest Airlines |
| MSO | EWR Newark, NJ US | Northwest Airlines |
| MSO | IAD Washington, DC, DC US | Northwest Airlines |
| MSO | JFK New York City, NY US | Northwest Airlines |
| MSO | LGA New York City, NY US | Northwest Airlines |
| MSO | DFW Dallas / Ft Worth, TX US | Northwest Airlines |
| MSO | MDW Chicago, IL US | Northwest Airlines |
| MSO | ORD Chicago, IL US | Northwest Airlines |
| MSO | DEN Denver, CO | Sky West Airlines, Inc. |
| MSO | DRO Durango, CO | Sky West Airlines, Inc. |
| MSO | FAT Fresno, CA | Sky West Airlines, Inc. |
| MSO | GJT Grand Junction, CO | Sky West Airlines, Inc. |
| MSO | MEM Memphis, TN | Sky West Airlines, Inc. |
| MSO | MTJ Montrose, CO | Sky West Airlines, Inc. |
| MSO | RAP Rapid City, SD | Sky West Airlines, Inc. |
| MSO | SLC Salt Lake City, UT | Sky West Airlines, Inc. |
| MSO | EWR Newark, NJ US | United Airlines |
| MSO | IAD Washington, DC, DC US | United Airlines |
| MSO | LGA New York City, NY US | United Airlines |
| MSO | DFW Dallas / Ft Worth, TX US | United Airlines |
| MSO | IAH Houston, TX US | United Airlines |
| MSO | ORD Chicago, IL US | United Airlines |
There is over 34 domestic flights from MSO airport.
