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Domestic Scheduled Flights
| Origin | Destination | Carier |
| SJC | DCA Washington, DC, DC US | America West Airlines |
| SJC | IAD Washington, DC, DC US | America West Airlines |
| SJC | EWR Newark, NJ US | America West Airlines |
| SJC | IAH Houston, TX US | America West Airlines |
| SJC | DCA Washington, DC, DC US | American Airlines |
| SJC | IAD Washington, DC, DC US | American Airlines |
| SJC | TPA Tampa, FL US | American Airlines |
| SJC | DAL Dallas, TX US | American Airlines |
| SJC | DFW Dallas / Ft Worth, TX US | American Airlines |
| SJC | HOU Houston, TX US | American Airlines |
| SJC | IAH Houston, TX US | American Airlines |
| SJC | JFK New York City, NY US | American Airlines |
| SJC | LGA New York City, NY US | American Airlines |
| SJC | ORD Chicago, IL US | American Airlines |
| SJC | DAL Dallas, TX US | Continental Airlines |
| SJC | EWR Newark, NJ US | Continental Airlines |
| SJC | IAH Houston, TX US | Continental Airlines |
| SJC | TPA Tampa, FL US | Delta Air Lines |
| SJC | MDW Chicago, IL US | Frontier Airlines |
| SJC | JFK New York City, NY US | JetBlue Airways |
| SJC | CLD Carlsbad, CA | Mesa Airlines, Inc. |
| SJC | COS Colorado Springs, CO | Mesa Airlines, Inc. |
| SJC | DEN Denver, CO | Mesa Airlines, Inc. |
| SJC | DFW Dallas/Fort Worth, TX | Mesa Airlines, Inc. |
| SJC | ELP El Paso, TX | Mesa Airlines, Inc. |
| SJC | FLG Flagstaff, AZ | Mesa Airlines, Inc. |
| SJC | IAH Houston, TX | Mesa Airlines, Inc. |
| SJC | ICT Wichita, KS | Mesa Airlines, Inc. |
| SJC | PHX Phoenix, AZ | Mesa Airlines, Inc. |
| SJC | PSP Palm Springs, CA | Mesa Airlines, Inc. |
| SJC | TUS Tucson, AZ | Mesa Airlines, Inc. |
| SJC | BFL Bakersfield, CA | Sky West Airlines, Inc. |
| SJC | CLD Carlsbad, CA | Sky West Airlines, Inc. |
| SJC | COS Colorado Springs, CO | Sky West Airlines, Inc. |
| SJC | FAT Fresno, CA | Sky West Airlines, Inc. |
| SJC | IPL El Centro, CA | Sky West Airlines, Inc. |
| SJC | IYK Inyokern, CA | Sky West Airlines, Inc. |
| SJC | LAS Las Vegas, NV | Sky West Airlines, Inc. |
| SJC | LAX Los Angeles, CA | Sky West Airlines, Inc. |
| SJC | OAK Oakland, CA | Sky West Airlines, Inc. |
| SJC | ONT Ontario, CA | Sky West Airlines, Inc. |
| SJC | OXR Oxnard, CA | Sky West Airlines, Inc. |
| SJC | PHX Phoenix, AZ | Sky West Airlines, Inc. |
| SJC | PSP Palm Springs, CA | Sky West Airlines, Inc. |
| SJC | SAN San Diego, CA | Sky West Airlines, Inc. |
| SJC | SBA Santa Barbara, CA | Sky West Airlines, Inc. |
| SJC | SBP San Luis Obispo, CA | Sky West Airlines, Inc. |
| SJC | SFO San Francisco, CA | Sky West Airlines, Inc. |
| SJC | SGU St. George, UT | Sky West Airlines, Inc. |
| SJC | SLC Salt Lake City, UT | Sky West Airlines, Inc. |
| SJC | SMF Sacramento, CA | Sky West Airlines, Inc. |
| SJC | SMX Santa Maria, CA | Sky West Airlines, Inc. |
| SJC | SNA Santa Ana, CA | Sky West Airlines, Inc. |
| SJC | TUS Tucson, AZ | Sky West Airlines, Inc. |
| SJC | VIS Visalia, CA | Sky West Airlines, Inc. |
| SJC | YUM Yuma, AZ | Sky West Airlines, Inc. |
| SJC | TPA Tampa, FL US | Southwest Airlines |
| SJC | DAL Dallas, TX US | Southwest Airlines |
| SJC | HOU Houston, TX US | Southwest Airlines |
| SJC | MDW Chicago, IL US | Southwest Airlines |
| SJC | DCA Washington, DC, DC US | United Airlines |
| SJC | IAD Washington, DC, DC US | United Airlines |
| SJC | LGA New York City, NY US | United Airlines |
| SJC | ORD Chicago, IL US | United Airlines |
There is over 64 domestic flights from SJC airport.
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