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Domestic Scheduled Flights
| Origin | Destination | Carier |
| JAX | MSY New Orleans, LA | Air Midwest, Inc. |
| JAX | PNS Pensacola, FL | Air Midwest, Inc. |
| JAX | TLH Tallahassee, FL | Air Midwest, Inc. |
| JAX | HOU Houston, TX US | AirTran Airways |
| JAX | MDW Chicago, IL US | AirTran Airways |
| JAX | JFK New York City, NY US | American Airlines |
| JAX | LGA New York City, NY US | American Airlines |
| JAX | DFW Dallas / Ft Worth, TX US | American Airlines |
| JAX | IAH Houston, TX US | American Airlines |
| JAX | ABE Allentown, PA | Atlantic Coast Airlines |
| JAX | ALB Albany, NY | Atlantic Coast Airlines |
| JAX | AVP Scranton/Wilkes-Barre, PA | Atlantic Coast Airlines |
| JAX | BDL Windsor Locks, CT | Atlantic Coast Airlines |
| JAX | BGM Binghamton, NY | Atlantic Coast Airlines |
| JAX | BNA Nashville, TN | Atlantic Coast Airlines |
| JAX | BTV Burlington, VT | Atlantic Coast Airlines |
| JAX | BUF Buffalo, NY | Atlantic Coast Airlines |
| JAX | CAE Columbia, SC | Atlantic Coast Airlines |
| JAX | CAK Akron/Canton, OH | Atlantic Coast Airlines |
| JAX | CHO Charlottesville, VA | Atlantic Coast Airlines |
| JAX | CID Cedar Rapids, IA | Atlantic Coast Airlines |
| JAX | CLE Cleveland, OH | Atlantic Coast Airlines |
| JAX | CMH Columbus, OH | Atlantic Coast Airlines |
| JAX | CRW Charleston, WV | Atlantic Coast Airlines |
| JAX | DAY Dayton, OH | Atlantic Coast Airlines |
| JAX | DSM Des Moines, IA | Atlantic Coast Airlines |
| JAX | DTW Detroit, MI | Atlantic Coast Airlines |
| JAX | EWR Newark, NJ | Atlantic Coast Airlines |
| JAX | FAR Fargo, ND | Atlantic Coast Airlines |
| JAX | FSD Sioux Falls, SD | Atlantic Coast Airlines |
| JAX | FWA Fort Wayne, IN | Atlantic Coast Airlines |
| JAX | GRR Grand Rapids, MI | Atlantic Coast Airlines |
| JAX | GSO Greensboro/High Point, NC | Atlantic Coast Airlines |
| JAX | HPN White Plains, NY | Atlantic Coast Airlines |
| JAX | IAD Washington, DC | Atlantic Coast Airlines |
| JAX | ICT Wichita, KS | Atlantic Coast Airlines |
| JAX | IND Indianapolis, IN | Atlantic Coast Airlines |
| JAX | JFK New York, NY | Atlantic Coast Airlines |
| JAX | LAN Lansing, MI | Atlantic Coast Airlines |
| JAX | LGA New York, NY | Atlantic Coast Airlines |
| JAX | MBS Saginaw, MI | Atlantic Coast Airlines |
| JAX | MDT Harrisburg, PA | Atlantic Coast Airlines |
| JAX | MEM Memphis, TN | Atlantic Coast Airlines |
| JAX | MHT Manchester, NH | Atlantic Coast Airlines |
| JAX | MLI Moline, IL | Atlantic Coast Airlines |
| JAX | MSN Madison, WI | Atlantic Coast Airlines |
| JAX | OKC Oklahoma City, OK | Atlantic Coast Airlines |
| JAX | ORD Chicago, IL | Atlantic Coast Airlines |
| JAX | ORF Norfolk, VA | Atlantic Coast Airlines |
| JAX | PHL Philadelphia, PA | Atlantic Coast Airlines |
| JAX | PIA Peoria, IL | Atlantic Coast Airlines |
| JAX | PIT Pittsburgh, PA | Atlantic Coast Airlines |
| JAX | PVD Providence, RI | Atlantic Coast Airlines |
| JAX | PWM Portland, ME | Atlantic Coast Airlines |
| JAX | RDU Raleigh/Durham, NC | Atlantic Coast Airlines |
| JAX | RIC Richmond, VA | Atlantic Coast Airlines |
| JAX | ROA Roanoke, VA | Atlantic Coast Airlines |
| JAX | ROC Rochester, NY | Atlantic Coast Airlines |
| JAX | SCE State College, PA | Atlantic Coast Airlines |
| JAX | SDF Louisville, KY | Atlantic Coast Airlines |
| JAX | SGF Springfield, MO | Atlantic Coast Airlines |
| JAX | SWF Newburgh, NY | Atlantic Coast Airlines |
| JAX | SYR Syracuse, NY | Atlantic Coast Airlines |
| JAX | TUL Tulsa, OK | Atlantic Coast Airlines |
| JAX | TYS Knoxville, TN | Atlantic Coast Airlines |
| JAX | EWR Newark, NJ US | Continental Airlines |
| JAX | DAL Dallas, TX US | Continental Airlines |
| JAX | IAH Houston, TX US | Continental Airlines |
| JAX | DCA Washington, DC, DC US | Delta Air Lines |
| JAX | EWR Newark, NJ US | Delta Air Lines |
| JAX | IAD Washington, DC, DC US | Delta Air Lines |
| JAX | JFK New York City, NY US | Delta Air Lines |
| JAX | LGA New York City, NY US | Delta Air Lines |
| JAX | HOU Houston, TX US | Delta Air Lines |
| JAX | ATW Appleton, WI | Express Airlines |
| JAX | CID Cedar Rapids, IA | Express Airlines |
| JAX | CWA Wausau, WI | Express Airlines |
| JAX | DSM Des Moines, IA | Express Airlines |
| JAX | FSD Sioux Falls, SD | Express Airlines |
| JAX | GRB Green Bay, WI | Express Airlines |
| JAX | ICT Wichita, KS | Express Airlines |
| JAX | LNK Lincoln, NE | Express Airlines |
| JAX | MEM Memphis, TN | Express Airlines |
| JAX | MLI Moline, IL | Express Airlines |
| JAX | MSN Madison, WI | Express Airlines |
| JAX | MSP Minneapolis, MN | Express Airlines |
| JAX | OKC Oklahoma City, OK | Express Airlines |
| JAX | RST Rochester, MN | Express Airlines |
| JAX | SUX Sioux City, IA | Express Airlines |
| JAX | TUL Tulsa, OK | Express Airlines |
| JAX | IAD Washington, DC, DC US | Independence Air |
| JAX | JFK New York City, NY US | JetBlue Airways |
| JAX | DCA Washington, DC | Mesa Airlines, Inc. |
| JAX | AVL Asheville, NC | Piedmont Airlines |
| JAX | CAE Columbia, SC | Piedmont Airlines |
| JAX | CHA Chattanooga, TN | Piedmont Airlines |
| JAX | CHO Charlottesville, VA | Piedmont Airlines |
| JAX | CLT Charlotte, NC | Piedmont Airlines |
| JAX | CRW Charleston, WV | Piedmont Airlines |
| JAX | EWN New Bern, NC | Piedmont Airlines |
| JAX | EYW Key West, FL | Piedmont Airlines |
| JAX | FAY Fayetteville, NC | Piedmont Airlines |
| JAX | FLO Florence, SC | Piedmont Airlines |
| JAX | HHH Hilton Head Island, SC | Piedmont Airlines |
| JAX | ILM Wilmington, NC | Piedmont Airlines |
| JAX | MCO Orlando, FL | Piedmont Airlines |
| JAX | MIA Miami, FL | Piedmont Airlines |
| JAX | ORF Norfolk, VA | Piedmont Airlines |
| JAX | PBI West Palm Beach, FL | Piedmont Airlines |
| JAX | PHF Newport News, VA | Piedmont Airlines |
| JAX | PNS Pensacola, FL | Piedmont Airlines |
| JAX | ROA Roanoke, VA | Piedmont Airlines |
| JAX | TLH Tallahassee, FL | Piedmont Airlines |
| JAX | TPA Tampa, FL | Piedmont Airlines |
| JAX | TRI Kingsport, TN | Piedmont Airlines |
| JAX | TYS Knoxville, TN | Piedmont Airlines |
| JAX | TPA Tampa, FL US | Southwest Airlines |
| JAX | DAL Dallas, TX US | Southwest Airlines |
| JAX | HOU Houston, TX US | Southwest Airlines |
| JAX | MDW Chicago, IL US | Southwest Airlines |
| JAX | IAD Washington, DC, DC US | United Airlines |
| JAX | ORD Chicago, IL US | United Airlines |
| JAX | DCA Washington, DC, DC US | US Airways |
| JAX | ORD Chicago, IL US | US Airways |
There is over 124 domestic flights from JAX airport.
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