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Domestic Scheduled Flights
| Origin | Destination | Carier |
| HYS | GBD Great Bend, KS | Air Midwest, Inc. |
| HYS | MCI Kansas City, MO | Air Midwest, Inc. |
| HYS | AIA Alliance, NE | Great Lakes Aviation, Ltd. |
| HYS | ALS Alamosa, CO | Great Lakes Aviation, Ltd. |
| HYS | AMA Amarillo, TX | Great Lakes Aviation, Ltd. |
| HYS | BFF Scottsbluff, NE | Great Lakes Aviation, Ltd. |
| HYS | CDR Chadron, NE | Great Lakes Aviation, Ltd. |
| HYS | CEZ Cortez, CO | Great Lakes Aviation, Ltd. |
| HYS | CPR Casper, WY | Great Lakes Aviation, Ltd. |
| HYS | DEN Denver, CO | Great Lakes Aviation, Ltd. |
| HYS | DIK Dickinson, ND | Great Lakes Aviation, Ltd. |
| HYS | FMN Farmington, NM | Great Lakes Aviation, Ltd. |
| HYS | GCC Gillette, WY | Great Lakes Aviation, Ltd. |
| HYS | LAR Laramie, WY | Great Lakes Aviation, Ltd. |
| HYS | SAF Santa Fe, NM | Great Lakes Aviation, Ltd. |
| HYS | SHR Sheridan, WY | Great Lakes Aviation, Ltd. |
There is over 16 domestic flights from HYS airport.
