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International Scheduled Flights
| Origin | Destination | Carier |
| PUJ | MIA Miami, Florida US | Aero 2000 |
| PUJ | YEG Edmonton International AB, Canada CA | Air Canada |
| PUJ | YHZ Halifax Ns, Canada CA | Air Canada |
| PUJ | YUL Montreal, Canada CA | Air Canada |
| PUJ | YWG Winnipeg MB, Canada CA | Air Canada |
| PUJ | YYC Calgary AB, Canada CA | Air Canada |
| PUJ | YYZ Toronto, Canada CA | Air Canada |
| PUJ | JFK New York City, New York US | American Airlines, Inc. |
| PUJ | MIA Miami, Florida US | American Airlines, Inc. |
| PUJ | VIE Vienna, Austria AT | Austrian Airlines |
| PUJ | EWR Newark, New Jersey US | Continental Air Lines, Inc. |
| PUJ | ATL Atlanta, Georgia US | Delta Air Lines, Inc. |
| PUJ | JFK New York City, New York US | Delta Air Lines, Inc. |
| PUJ | SJU San Juan, Puerto Rico US | Executive Airlines |
| PUJ | MIA Miami, Florida US | Lan-Chile Airlines |
| PUJ | MSP St. Paul, Minnesota US | Northwest Airlines, Inc. |
| PUJ | FLL Fort Lauderdale, Florida US | Spirit Airlines |
| PUJ | MSP St. Paul, Minnesota US | Sun Country Airlines |
| PUJ | IAD Washington DC, Virginia US | United Air Lines, Inc. |
| PUJ | ORD Chicago, Illinois US | United Air Lines, Inc. |
| PUJ | BOS Boston, Massachusetts US | Us Airways, Inc. |
| PUJ | CLT Charlotte, North Carolina US | Us Airways, Inc. |
| PUJ | PHL Philadelphia, Pennsylvania US | Us Airways, Inc. |
| PUJ | BDL Hartford, Connecticut US | USA 3000 Airlines |
| PUJ | BWI Baltimore, Maryland US | USA 3000 Airlines |
| PUJ | CLE Cleveland, Ohio US | USA 3000 Airlines |
| PUJ | CLT Charlotte, North Carolina US | USA 3000 Airlines |
| PUJ | CVG Cincinnati, Kentucky US | USA 3000 Airlines |
| PUJ | DTW Detroit, Michigan US | USA 3000 Airlines |
| PUJ | EWR Newark, New Jersey US | USA 3000 Airlines |
| PUJ | ORD Chicago, Illinois US | USA 3000 Airlines |
| PUJ | PHL Philadelphia, Pennsylvania US | USA 3000 Airlines |
| PUJ | PIT Pittsburgh, Pennsylvania US | USA 3000 Airlines |
| PUJ | RDU Raleigh - Durham, North Carolina US | USA 3000 Airlines |
| PUJ | STL St Louis, Missouri US | USA 3000 Airlines |
International Charter Flights
| Origin | Destination | Carier |
| PUJ | MKE Milwaukee, Wisconsin US | Allegiant Air |
| PUJ | SFB Sanford, Florida US | Allegiant Air |
| PUJ | BOS Boston, Massachusetts US | Casino Express |
| PUJ | MCO Orlando, Florida US | Casino Express |
| PUJ | BOS Boston, Massachusetts US | Executive Airlines |
| PUJ | JFK New York City, New York US | Executive Airlines |
| PUJ | BOS Boston, Massachusetts US | Miami Air International |
| PUJ | BOS Boston, Massachusetts US | Omni Air Express |
| PUJ | BWI Baltimore, Maryland US | Omni Air Express |
| PUJ | JFK New York City, New York US | Omni Air Express |
| PUJ | SFB Sanford, Florida US | Pace Airlines |
| PUJ | MKE Milwaukee, Wisconsin US | Ryan International Airlines |
| PUJ | ORD Chicago, Illinois US | Ryan International Airlines |
There is over 48 international flights from PUJ airport.
